Question: " ERROR: ObjMgrNextAvailEntityID failed with idx 2048" when using blastpgp
0
gravatar for dago
4.8 years ago by
dago2.5k
Germany
dago2.5k wrote:

I am running blastpgp using as query a .faa file containing around 31.000 seq. My db contains also more than 50000 seq, and I select -m 9 to have a tab del output. During the run I get the following error:

 ERROR: ObjMgrNextAvailEntityID failed with idx 2048

but blast keeps running.

I read here that before blast+, this was an issue. I already had blast+, however I downloaded the lates version (2.2.30) re-installed and run it again. But still the same error.

Any idea hot to fix this?

blast software error • 1.3k views
ADD COMMENTlink modified 4.8 years ago by hpmcwill1.1k • written 4.8 years ago by dago2.5k
2
gravatar for hpmcwill
4.8 years ago by
hpmcwill1.1k
United Kingdom
hpmcwill1.1k wrote:

Given that the Legacy NCBI BLAST program 'blastpgp' was replaced with the 'psiblast' program in NCBI BLAST+, one possibility is that you are still using 'blastpgp', and thus the Legacy NCBI BLAST programs.

Check the command line being used, and ensure it has been converted to the form used by the NCBI BLAST+ tools (see "BLAST Command Line Applications User Manual" for more details). If you still have problems after converting the process to use NCBI BLAST+, I suggest contacting the BLAST folks (blast-help@ncbi.nlm.nih.gov) at NCBI for further assistance.

ADD COMMENTlink written 4.8 years ago by hpmcwill1.1k

Thanks I will give it a try!

 

ADD REPLYlink written 4.8 years ago by dago2.5k
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