R Equivalent of Cross-Gene Error Model (CGEM) (Rocke and Durbin 2001).
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6.6 years ago

Hello, do any of you gurus know if there as an R module equivalent to the Cross-Gene Error Model (CGEM) (Rocke and Durbin 2001) found in GeneSpring?

Thanks, Robert

R CGEM • 1.2k views
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6.6 years ago
David Fredman ★ 1.1k

The background correction and mean-variance estimation in the vsn package http://www.bioconductor.org/packages/release/bioc/html/vsn.html or the RMA method in the affy package might do what you need?

 

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