Reference independent bacterial genome visualization
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6.3 years ago
h.botond ▴ 40

Hi everybody!

Do somebody know a software which is useful to visualize aligned genomes in a circular way? I aligned three bacterial genomes with mummer (Mauve) and now I want to visualize these alignment. The BRIG is a really nice tool but it needs a reference genome and that is a big problem for me.

Thanks for every help. 

visualization comparative genomics bacteria • 2.4k views
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6.3 years ago
HG ★ 1.1k

Circos may be a better choice in such a case. Please have a look  http://circos.ca/intro/data_visualization/

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Yes the Circos is a really good software but a little to complicate for me. Is there easier solutions? 

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Please have a look http://bioinf.spbau.ru/sibelia. Sibelia can easily generate input config file  for Circos

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