Question

Reference independent bacterial genome visualization

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10.5 years ago

h.botond ▴ 50

Hi everybody!

Do somebody know a software which is useful to visualize aligned genomes in a circular way? I aligned three bacterial genomes with mummer (Mauve) and now I want to visualize these alignment. The BRIG is a really nice tool but it needs a reference genome and that is a big problem for me.

Thanks for every help.

visualization comparative-genomics bacteria • 3.4k views

ADD COMMENT • link updated 3.3 years ago by Ram 45k • written 10.5 years ago by h.botond ▴ 50

Ram · Accepted Answer · 2014-12-15

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10.5 years ago

HG ★ 1.2k

Circos may be a better choice in such a case. Please have a look http://circos.ca/intro/data_visualization/

ADD COMMENT • link updated 3.3 years ago by Ram 45k • written 10.5 years ago by HG ★ 1.2k

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Yes the Circos is a really good software but a little to complicate for me. Is there easier solutions?

ADD REPLY • link updated 3.3 years ago by Ram 45k • written 10.5 years ago by h.botond ▴ 50

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Please have a look at Sibelia, which can easily generate input config file for Circos

ADD REPLY • link updated 3.3 years ago by Ram 45k • written 10.5 years ago by HG ★ 1.2k