Reference independent bacterial genome visualization
1
0
Entering edit mode
7.8 years ago
h.botond ▴ 50

Hi everybody!

Do somebody know a software which is useful to visualize aligned genomes in a circular way? I aligned three bacterial genomes with mummer (Mauve) and now I want to visualize these alignment. The BRIG is a really nice tool but it needs a reference genome and that is a big problem for me.

Thanks for every help.

visualization comparative-genomics bacteria • 2.8k views
ADD COMMENT
2
Entering edit mode
7.8 years ago
HG ★ 1.2k

Circos may be a better choice in such a case. Please have a look http://circos.ca/intro/data_visualization/

ADD COMMENT
0
Entering edit mode

Yes the Circos is a really good software but a little to complicate for me. Is there easier solutions?

ADD REPLY
0
Entering edit mode

Please have a look at Sibelia, which can easily generate input config file for Circos

ADD REPLY

Login before adding your answer.

Traffic: 775 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6