I installed boost (prefixed at /data/xma/local/boost/), bowtie, samtools, all without problem, but am facing tophat problem:
checking whether Boost::Thread needs Boost::System library... configure: error: Cannot use Boost::Thread
My command is
./configure \ --prefix=/data/xma/local/tophat/ \ --with-boost=/data/xma/local/boost/ \ --with-bam=/data/xma/tools/samtools-0.1.19
I tried adding the option
--with-boost-libdir=/data/xma/local/boost/lib, unfortunately it does not work. Could anyone kindly offers me solutions? I have been in trouble for hours. Thanks a lot!