Question

Tool Generates CDS sequence

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9.3 years ago

evo_genomics ▴ 60

Can any one suggest me the name of tool that generates CDS sequence from Genomic File (I am working on more than 100 Genomic Files).

CDS sequence • 1.8k views

ADD COMMENT • link updated 9 months ago by Ram 43k • written 9.3 years ago by evo_genomics ▴ 60

score 0 · Answer 1 · 2014-12-16

If you have the transcript sequences of your genomic files, you can use TransDecoder: http://transdecoder.sourceforge.net/.

TransDecoder can identify CDS introducing as input a transcript fasta file. First identifies a minimum length open reading frames (ORF) within transcript sequences, and then it perform some kind of scoring in order to choose the most relevant CDS.