I've been running rnahybrid on some custom UTR and mirna sequences and it seems to work fine as i get a long list of possible targets, however, the last entry on all the files is an error message
"Error in nextSQ. Aborting"
I've googled it and nothing has appeared, I found the source file for it, but I can't understand it at all.
Could someone explain to me what the error message means?