Question: rnahybrid "Error in nextSQ. Aborting"
gravatar for nathanielsaxe
4.5 years ago by
United Kingdom
nathanielsaxe10 wrote:

I've been running rnahybrid on some custom UTR and mirna sequences and it seems to work fine as i get a long list of possible targets, however, the last entry on all the files is an error message

"Error in nextSQ. Aborting"

I've googled it and nothing has appeared, I found the source file for it, but I can't understand it at all.

Could someone explain to me what the error message means? 



ADD COMMENTlink modified 4.5 years ago by David Fredman990 • written 4.5 years ago by nathanielsaxe10
gravatar for David Fredman
4.5 years ago by
David Fredman990
University of Bergen, Norway
David Fredman990 wrote:

A guess on the error message - your fasta file ends with an empty line or similar, that makes the Fasta parser in RNAhybrid fail on trying to parse it. Alternatively, you have a malformatted fasta entry in a multi-fasta sequence. Do you get results for all your UTR and miRNA sequences, or does it stop mid-way somewhere?

On a side note, the latest version of the source code is here

ADD COMMENTlink modified 4.5 years ago • written 4.5 years ago by David Fredman990
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1593 users visited in the last hour