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9.4 years ago
Zhilong Jia
★
2.2k
There is no Gene SYMBOL in annotation of GPL5447, the Gene ACCESSION is GB_LIST in the file. And I can find some via http://idconverter.bioinfo.cnio.es/IDconverter.php . e.g. AA598492 and AA825404 are UBE2B and IL2RG
But I can not find it in the org.Hs.eg.db
or Homo.sapiens
in R, code as below.
library(Homo.sapiens)
keys <- c("AA484435", "AA598492", "AA825404")
columns <- c("SYMBOL")
select(Homo.sapiens, keys, columns, keytype = "ACCNUM")
ACCNUM SYMBOL
1 AA484435 A1BG
2 AA598492 <NA>
3 AA825404 <NA>
Any solution?
Hi Zhilong! Did you find a way? I too am facing the same problem. Thanks!