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• How To Overlap Human And Mouse Genomic Regions (Ex: Chip-Seq Peaks)
  Hi I am trying to overlap hg19 and mm9 genomic regions. Should I liftover hg19 to mm9 before I ov...
• ChIP-Seq contaminated by human tissue?
  Hi, I have a mouse H3K27ac ChIP-Seq data with totally 23,316,540 reads after trimming. Its 85.75...
• what is the mean count number in IGV RefSeq Genes track
  Hello, I am pretty new for using IGV, when I open it, I can see there is a RefSeq Genes track loa...
• How To Stitch Maf Blocks
  Dear Biostars, I am using Galaxy "stichMAFBolcks" option against my genomic intervals (mm9). Sur...
• What causes this message in IGV?
  I am trying to visulize rna-seq mapped data for mouse from Tophat results (accepted_hits.bam file...
• What Is The Best Tool For Mouse (Mm9 Or Mm10) Variant Annotations?
  I am working with some mouse exome capture data, and I would like to provide functional annotatio...
• Liftover from mm9 to hg19 to identify conserved repetitive elements
  Hi, I am interested in finding out whether certain repetitive elements in mice are conserved in ...
• total number of coding genes in mm9 and hg19
  Is there any source (URL) which can give me total number of coding genes in hg19 as well as mm9, ...
• Mouse To Human Coordinates
  Is there any way to convert mouse coordinates(mm9) into human coordinates(hg19). I know it is not...
• Find All Annotated Rrna (Rdna) Sequences
  Hello all, I think it would be good to post it here for future reference. I could not find a re...
• Reference genome version
  I have a human fastq file from illumina Hi 2000. I want to assemble it on a reference genome, but...
• Where Can I Find The Genomic Co-Ordinates Of Known Pathogenic Loci In Both Mouse (Mm9) And Human (Hg19)
  I would like to download the genomic co-ordinates of mouse and human pathogenic loci in BED forma...
• Differences Between Reference Human Genome Assemblies From Different Sources
  I am relatively new to analysis of whole transcriptome RNA sequencing data. I am planning to map ...
• Filtering out mouse cells based on mouse/human genes ratio
  I have a 10x output for a tumor sample from a mouse xenograft. To make my further analysis clear,...
• Mapping Mouse Genes To Human Genes (Using Pwms)
  What might be some strategies for mapping genes from mouse (say, mm9) to human (hg18 or hg19) usi...
• Chromosome Position From Ucsc Genome Browser
  Hi all, I am looking for the coordinates of all the chromosomes in a particular species from uc...
• assembly of mouse transcriptome from BAM file
  hello, We work with a mouse strain different from the strain that was used in generating the stan...