Question

Yeast genome SK1 strain

2

Entering edit mode

9.3 years ago

Varun Gupta ★ 1.3k

Hi Everyone,

I am interested in getting the genomic sequence of SK1 strain of YEAST. Where can I get the fasta file for it. I can see that IGV has SK1 genome for yeast on their server (they also have sacCer3 which is easily available), but I could not find the genomic sequence. Could anyone help me finding the genomic sequence for it.

Thanks.

Regards
Varun

fasta yeast genome • 3.4k views

ADD COMMENT • link updated 2.1 years ago by Ram 43k • written 9.3 years ago by Varun Gupta ★ 1.3k

Ram · Answer 1 · 2014-12-18

1

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9.3 years ago

GouthamAtla 12k

Here is the link http://www.ncbi.nlm.nih.gov/nuccore/JRIH00000000

Click on WGS to get the fasta file. Hope this is the one you are looking for.

ADD COMMENT • link updated 2.1 years ago by Ram 43k • written 9.3 years ago by GouthamAtla 12k

0

Entering edit mode

Hi Geek,

Thanks for the answer. I can see on IGV the chromosomes are in chr1, chr2..chrm but these are basically 451 contigs. Is there a fasta file for sk1 genome with chr1 chr2 .. chrm as contigs.

Thanks for the help

Regards
Varun

ADD REPLY • link updated 2.1 years ago by Ram 43k • written 9.3 years ago by Varun Gupta ★ 1.3k