Question: Yeast genome SK1 strain
2
gravatar for Varun Gupta
4.3 years ago by
Varun Gupta1.1k
United States
Varun Gupta1.1k wrote:

Hi Everyone,

I am interested in getting the genomic sequence of SK1 strain of YEAST. Where can I get the fasta file for it. I can see that IGV has SK1 genome for yeast on their server (they also have sacCer3 which is easily available ), but I could not find the genomic sequence. Could anyone help me finding the genomic sequence for it.

Thanks.

 

Regards

Varun

yeast genome fasta • 1.8k views
ADD COMMENTlink modified 4.3 years ago by geek_y9.3k • written 4.3 years ago by Varun Gupta1.1k
1
gravatar for geek_y
4.3 years ago by
geek_y9.3k
Barcelona/CRG/London/Imperial
geek_y9.3k wrote:

Here is the link http://www.ncbi.nlm.nih.gov/nuccore/JRIH00000000

Click on WGS to get the fasta file. Hope this is the one you are looking for.

ADD COMMENTlink written 4.3 years ago by geek_y9.3k

HI Geek,
Thanks for the answer. I can see on IGV the chromosomes are in chr1, chr2..chrm but these are basically 451 contigs. Is there a fasta file for sk1 genome with chr1 chr2 .. chrm as contigs.

Thanks for the help

 

Regards

Varun

ADD REPLYlink written 4.3 years ago by Varun Gupta1.1k
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