Question: Get Fasta -Protein Sequences for Given protein names(Homo sapiens)
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gravatar for genie66
5.2 years ago by
genie6620
United States
genie6620 wrote:

I have a list of protein names and I wanted to get the fasta sequence of all the proteins in the list. In batch entrez it requires  GI or accession number, but I have only protein names! Is there is any other way to download sequences in batch!? Please help me

batch sequence download • 1.9k views
ADD COMMENTlink modified 5.2 years ago by pld4.8k • written 5.2 years ago by genie6620
1
gravatar for pld
5.2 years ago by
pld4.8k
United States
pld4.8k wrote:

You should be able to provide an search term to esearch, but searching by gene name can be tricky, genes with similar names will also get downloaded. You should check the downloaded data before using it, also remember that you will likely capture all the various isoforms of the protein. You should manually validate the data you've downloaded before proceeding.

http://www.ncbi.nlm.nih.gov/books/NBK179288/

ADD COMMENTlink written 5.2 years ago by pld4.8k
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