Question

Fasta sequence of nucleotide sequences

0

Entering edit mode

9.3 years ago

ks26atul • 0

I have fasta format nucleotides sequences. I want to filter less than 200 fasta sequence from file.Please tell me any software or tool?

sequence • 2.1k views

ADD COMMENT • link updated 10 months ago by Ram 43k • written 9.3 years ago by ks26atul • 0

0

Entering edit mode

Thanks dear

ADD REPLY • link 9.3 years ago by ks26atul • 0

Ram · Accepted Answer · 2014-12-19

1

Entering edit mode

9.3 years ago

Brian Bushnell 20k

reformat.sh in=reads.fasta out=filtered.fasta minlength=200

ADD COMMENT • link updated 4.5 years ago by Ram 43k • written 9.3 years ago by Brian Bushnell 20k

score 0 · Accepted Answer · 2014-12-19

0

Entering edit mode

9.3 years ago

Pierre Lindenbaum 161k

awk '/^>/ {N++;if(N>200) exit 0;} {print;}' in.fa

ADD COMMENT • link 9.3 years ago by Pierre Lindenbaum 161k