Retrieve SIFT results using python and web server
0
0
Entering edit mode
9.3 years ago
nilus1432 ▴ 30

Hello Everyone,

I want to get results of SIFT from a set of aligned sequence using SIFT web server and python

SIFT site I am using is

http://sift.jcvi.org/www/SIFT_aligned_seqs_submit.html

I want to submit several alignments to this server and get scaled probabilities for each alignment using Python.

How to do it using urllib2 or any other library.

Thanks

-nil

alignment sequence SNP • 2.5k views
ADD COMMENT
0
Entering edit mode

IIRC there's a way to install SIFT locally. Not sure if you can use urllib2 to bypass this method.

ADD REPLY

Login before adding your answer.

Traffic: 2968 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6