I was running coverageBed with my exome bam file but it takes too long time and it hasn't returned output value.
Is it right that coverageBed takes much time to finish?
my bed file was very tiny so I thought that something might go in a wrong way.
below is my command and my bed file.
coverageBed -abam /DATA1/dmcb/TAR22_WES/TAR22S_sequence_readgroup_sort_dup_remove_realigned_recal.bam -b fgfr.bed -d > TAR22.cov.del.b36 10 123239372 123239472