I am using stand alone version of Psi-blast.
I want to get just the query sequence followed by matched-hit sequences (both aligned) in fasta format.
How to do it in Biopython or stand alone blast.
1. Some posts suggest Mview: for some reason this solution i am not using
2. I can get qseq and sseq using -outfmt 6 option but not full sequences in aligned format.
3. Similar to 2 i am able to get with biopython but again not full aligned sequences as i need
Thanks for help