Question: Jbrowse: importance of draw-basepair-track.pl
1
gravatar for CikLa
3.9 years ago by
CikLa90
Malaysia
CikLa90 wrote:

Hi,

I found a script named draw-basepair-track.pl in JBrowse program. May I know, what is that actually? Why do people want to draw the basepair track, is there any need of it? Just curious to know.

Regards,

CikAlal

jbrowse forum genome browser • 1.5k views
ADD COMMENTlink modified 3.9 years ago by Mitch Skinner660 • written 3.9 years ago by CikLa90
3
gravatar for cmdcolin
3.9 years ago by
cmdcolin930
United States
cmdcolin930 wrote:

It is a fairly old feature, but it still works. The functionality is documented here http://gmod.org/wiki/JBrowse_Configuration_Guide#draw-basepair-track.pl

 

There is also an example file "tests/data/base_pairing/XdecoderStructure.gff" on github that you can test out, see https://github.com/GMOD/jbrowse/tree/master/tests/data/base_pairing

 

Example base pairing track

 

 

ADD COMMENTlink written 3.9 years ago by cmdcolin930
1
gravatar for Mitch Skinner
3.9 years ago by
Mitch Skinner660
Emeryville, CA
Mitch Skinner660 wrote:

The original motivating application was to show patterns of base pairing in RNA secondary structures.

ADD COMMENTlink written 3.9 years ago by Mitch Skinner660
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