Hi Guys,I am trying to convert some sra files into bam format. At the moment, I am using this command from
sam-dump SRR390728 | samtools view -bS - > SRR390728.bam
but unfortunately I got an error message like this:
sam-dump.2.4.2 err: param invalid while validating file within file system module - content-size read from local file is invalid.
Having said that, i still get a bam file as output at the end. Can I ignore that error msg and continue with peak calling? Also how I can convert multiple sra files to bam in one go? Many thanks!