Question: TCGA data gene expression
2
gravatar for kanwarjag
5.5 years ago by
kanwarjag1.0k
United States
kanwarjag1.0k wrote:

I am trying to find gene expression (array) data for neuroblastoma tumors, When I see it @https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm

I could not see the neuroblastoma there . Am I missing?

Any pointer from experts please

gene expression array tcga • 4.8k views
ADD COMMENTlink modified 5.5 years ago by Cyriac Kandoth5.5k • written 5.5 years ago by kanwarjag1.0k
2
gravatar for Cyriac Kandoth
5.5 years ago by
Cyriac Kandoth5.5k
Memorial Sloan Kettering, New York, USA
Cyriac Kandoth5.5k wrote:

TCGA deals with adult tumors, and TARGET deals with pediatric tumors. TARGET's NBL data is not yet publicly available, but if you apply for the appropriate credentials, you can access the NBL gene expression data through the TARGET data matrix.

ADD COMMENTlink written 5.5 years ago by Cyriac Kandoth5.5k
0
gravatar for EagleEye
5.5 years ago by
EagleEye6.6k
Sweden
EagleEye6.6k wrote:

Hi, TCGA deals mostly with tissue specific cancers types. And neuroblastoma is not tissue specific . But you can find all neuroblastoma datasets in R2 database. Check our recent paper about neuroblastoma where we have validated our genes using R2 database : http://www.cell.com/cancer-cell/abstract/S1535-6108%2814%2900377-8

 

http://hgserver1.amc.nl/cgi-bin/r2/main.cgi

 

Sample datasets present in database: http://bioinformatics.kandurilab.org/biostars/R2_NB.png

 

 

ADD COMMENTlink modified 5.5 years ago • written 5.5 years ago by EagleEye6.6k
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