Question: Running pindel in single-end mode
gravatar for Gandalf
3.5 years ago by
Gandalf0 wrote:

Is it possible to run Pindel in single-end mode? In my case, Pindel program is failing because the paired-end 250 bp reads (500 bp in total) are larger than the amplicon size. I think this should not be possible since Pindel relies on paired-end reads to determine the indels but I was wondering if there is a way around it.

pindel • 1.1k views
ADD COMMENTlink written 3.5 years ago by Gandalf0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 913 users visited in the last hour