Question: Running pindel in single-end mode
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gravatar for Gandalf
2.7 years ago by
Gandalf0
Canada
Gandalf0 wrote:

Is it possible to run Pindel in single-end mode? In my case, Pindel program is failing because the paired-end 250 bp reads (500 bp in total) are larger than the amplicon size. I think this should not be possible since Pindel relies on paired-end reads to determine the indels but I was wondering if there is a way around it.

pindel • 848 views
ADD COMMENTlink written 2.7 years ago by Gandalf0
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