Question: Are there any neanderthals genes predictions methods ?
0
gravatar for Michel Edwar
4.7 years ago by
Michel Edwar70
Sweden
Michel Edwar70 wrote:

Hi guys,

Is there a way to predict neanderthals genes from the illmunia reads of the geneome presented in the The complete genome sequence of a Neanderthal from the Altai Mountains study?

basically what I am looking for is a method to predict the actual genes from the short mapped sequences of the neanderthals.

Also is there any public available data for Neanderthals genes to download them or to blast them against other organisms.

Thanks

 

genes sequence neanderthals • 1.1k views
ADD COMMENTlink modified 4.7 years ago by Emily_Ensembl19k • written 4.7 years ago by Michel Edwar70
2
gravatar for Emily_Ensembl
4.7 years ago by
Emily_Ensembl19k
EMBL-EBI
Emily_Ensembl19k wrote:

Have you seen the Neanderthal genome browser?

ADD COMMENTlink written 4.7 years ago by Emily_Ensembl19k

Yes I checked, but I can only find Homo sapiens genome. I wonder  how to download a single Neanderthals gene, e.g CCKAR, because when I go to

http://neandertal.ensemblgenomes.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000163394;r=4:26092116-26101140;t=ENST00000295589

to download its "Neanderthals'"  protein form, I seem to end up with the 'Homo sapiens"  protein only.

 

ADD REPLYlink written 4.7 years ago by Michel Edwar70
How about http://www.ebi.ac.uk/ena/data/view/ERP000119
ADD REPLYlink written 4.7 years ago by 5heikki8.5k
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