I have a very silly question. I am attempting to create weblogos from large numbers of sequences (I have formatted them so they are all the same length).
I'm having a beginners issue, which is I'm not sure what format is required by the motifs module of Biopython.
At the moment I have a fasta file which has sequences such as:
>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGAAACGG >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGACAAAG >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCCAAGG >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGACAACAGG >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGAGAAGG >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCAGGACA >nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGCTGCCTA
How should I change this so the motifs.create() command is happy with them?