I have a quick question if someone can help.
I am trying to use UnifiedGenotypper for variant calling, however no matter what file I use for
-L target interval (I downloaded from Illumina websites, UCSC) but it gives me error
File associated with name gr37Exons.bed is malformed: Problem reading the interval file caused by Badly formed genome loc: Contig chr1 given as location, but this contig isn't present in the Fasta sequence dictionary
Can someone help me with this??
Thanks in advance