Question: optical map & assembly
0
gravatar for b.lehri118
4.4 years ago by
b.lehri1180
United Kingdom
b.lehri1180 wrote:

If you have an optical map of a bacterial genome and wanted to do an assembly (with unpaired reads) guided by an optical map how would you go about doing it.

Does any one know of a software that is already made that may be able to do this??? any recomendation would be appreciated

Thanks

 

 

 

sequence assembly • 1.0k views
ADD COMMENTlink modified 4.4 years ago by rtliu2.0k • written 4.4 years ago by b.lehri1180
0
gravatar for rtliu
4.4 years ago by
rtliu2.0k
New Zealand
rtliu2.0k wrote:

You could try SOMA (Scaffolding using Optical Restriction Mapping):

Command line version: http://www.cbcb.umd.edu/software/soma

Web-based version: http://www.cbcb.umd.edu/soma/index.php

Published paper: http://bioinformatics.oxfordjournals.org/content/24/10/1229.short

 

ADD COMMENTlink written 4.4 years ago by rtliu2.0k
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