Question: Making a circos plot to show expression for a gene set rather than whole genome
gravatar for Peter.Wood
5.4 years ago by
Peter.Wood0 wrote:


I am a new user to the OmicCircos package and the R code. For a little while I have been trying to create a circos plot to show the expression of a gene set. However, after constructing data frames with gene names and segment sizes, the segAnglePo and sim.circos functions consistently revert to the hg19/hg18 genome to form the anchor of the figure. If someone please explain how to construct an anchor for the circos plot using a set of genes rather than the entire human genome it would be much appreciated.

Kind regards,


gene set omiccircos • 2.2k views
ADD COMMENTlink modified 5.3 years ago by Biostar ♦♦ 20 • written 5.4 years ago by Peter.Wood0

Try this one its a standalone set up with templates to format your data. I have installed "" but not yet tried

ADD REPLYlink written 3.4 years ago by krushnach80750
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