I am trying to find a package that can handle the iscan SNP genotyping data. I looked at Bioconductor 2.8 and found the following somewhat related just by name, and surfing the details, but I could not get categorically saying that they can handle iscan data.
beadarray Quality assessment and low-level analysis for Illumina BeadArray data beadarraySNP Normalization and reporting of Illumina SNP bead arrays BeadDataPackR Compression of Illumina BeadArray data SNPchip Classes and Methods for high throughput SNP chip data snpMatrix The snp.matrix and X.snp.matrix classes snpStats SnpMatrix and XSnpMatrix classes and methods
Please share your understanding or experience on suitable package I can use to process the iscan ( http://www.illumina.com/systems/iscan.ilmn) data from the step 0. Thanks;