Question: Bsmap methylation on Hadoop
0
gravatar for shalini.ravishankar
4.9 years ago by
shalini.ravishankar0 wrote:
Hello Everyone, Can someone give me some insights on how to do bsmap methylation extraction on human genome data using hadoop cluster??
ADD COMMENTlink modified 4.9 years ago by Devon Ryan93k • written 4.9 years ago by shalini.ravishankar0
0
gravatar for Devon Ryan
4.9 years ago by
Devon Ryan93k
Freiburg, Germany
Devon Ryan93k wrote:

The simplest method would be to just run each chromosome (or a part thereof, depending on how many cores you have, how the data is stored, etc.) on a separate core somewhere on the cluster. This actually has nothing to do with hadoop other than the fact that the cluster is likely using it for file storage.

ADD COMMENTlink written 4.9 years ago by Devon Ryan93k
Yeah. You are correct but I am wondering is there a way to do this using Hadoop.
ADD REPLYlink written 4.9 years ago by shalini.ravishankar0

If you want to write the code to do it, then pretty much anything is possible :)

ADD REPLYlink written 4.9 years ago by Devon Ryan93k
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