Hello out there,
I want to filter my Illumina reads for unwanted sequences and exclude them. I wanted to use deconseq for doing the job. Just for testing purposes I downloaded to my desktop pc and said the program to make a db out of the viral NCBI entrys.
With the command:
bwa64 index -p viren -a bwtsw virus_ti.fa >out.txt 2>&1 &
bwa generates a library containing of 8 files for the virus file. Just for testing purposes I wanted to use only the viral db to see if it works. But I get the following error:
ERROR: cannot find all database files for database "virus" in dir "/dcdata1/deconseq
But in the folder there are all files that where generated by the bwa command. Has anybody an idea what to do? And if anybody has experience with this program I would be very thankful for any advice.
With kind regards, Julian