I want to optimize the PWM algorithm. My original approach is brute force strategy which each position PWM score is calculated and compared with the threshold.Thus the running time is exponential dependent on the length of input string (DNA fragment). Is there some kind of speeding method to improve the performance the PWM string matching? If available, please provide some papers related to this problem so that I can implemented in my task. Thanks in advance.
Question: PWM matching alogrithm
5.8 years ago by
zhenyisong • 130
zhenyisong • 130 wrote:
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