Question: Hadoop BAM - how to use?
0
gravatar for shalini.ravishankar
4.9 years ago by
United States
shalini.ravishankar10 wrote:

Hello everyone,

Can someone explain me how to use Hadoop BAM. I am new to this field. I would really appreciate the help.

hadoop hadoop bam genome • 1.5k views
ADD COMMENTlink modified 16 days ago by ppatil0 • written 4.9 years ago by shalini.ravishankar10

just curious: what do you want to achieve with HadoopBam ? (I don't know this hadoop-based tool)

ADD REPLYlink written 4.9 years ago by Pierre Lindenbaum124k
0
gravatar for ppatil
16 days ago by
ppatil0
ppatil0 wrote:

hello,shalini.ravishankar Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.

You need to import the libraries into a java program, write and compile code that leverages these libraries, and then execute the map-reduce JARs. The BAM files would then sit directly in HDFS and can be put there using the Hadoop filesystem commands.

ADD COMMENTlink modified 16 days ago by lakhujanivijay4.6k • written 16 days ago by ppatil0
1

Hi ppatil

Please strictly adhere to biostars policies. We have removed your advertisement from your response.

ADD REPLYlink modified 16 days ago by ATpoint26k • written 16 days ago by lakhujanivijay4.6k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2055 users visited in the last hour