aracne in R using minet package
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9.2 years ago
stroman05 ▴ 20

I am trying to learn ARACNE for the first time but I am unable to start anything since I don't have the input dataset file. Below is what mentioned according to minet manual

build.mim(dataset, estimator = "spearman", disc = "none", nbins = sqrt(NROW(dataset)))

The argument dataset data.frame containing gene expression data or any dataset where columns contain variables/features and rows contain outcomes/samples.

Can anyone of you please tell where can I get this sample input dataset file? and how to start executing the program step by step starting from the scratch. Is there any video tutorials available to learn for a first timer like me.

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9.2 years ago
catster ▴ 10

You can load the provided dataset using data(syn.data) and the infer a network using ARACNE with minet(syn.data,method="aracne").

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