Question: Correlate gene expression data with mutations TCGA
1
gravatar for nikkitta.sa
4.8 years ago by
nikkitta.sa10
United States
nikkitta.sa10 wrote:

Hello, 

I would like to correlate gene expression with mutations in breast invasive carcinoma. 

I downloaded level 3 gene expression data from TCGA.

Now, to take it one step further, what kind of data can I work with for drawing a correlation between up- or down- regulation of my gene of interest with the number of mutations observed in tumor samples?

ADD COMMENTlink modified 4.8 years ago by EagleEye6.5k • written 4.8 years ago by nikkitta.sa10
2
gravatar for EagleEye
4.8 years ago by
EagleEye6.5k
Sweden
EagleEye6.5k wrote:
This might be useful for you: http://www.ncbi.nlm.nih.gov/pubmed/25383969
ADD COMMENTlink written 4.8 years ago by EagleEye6.5k

Thanks, I'll look into it. 

ADD REPLYlink written 4.8 years ago by nikkitta.sa10
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