Question: rna seq public databases
0
gravatar for David_emir
4.4 years ago by
David_emir340
India
David_emir340 wrote:
Hi. Please let me know the various publicly available databases for rna seq data. I am actually looking at various available databases where i can download it and have metaanalys.plz provide your valuable suggestions.Thanks for your help...it means lot to me. Thanks again -Ateeq
databases rna-seq • 1.2k views
ADD COMMENTlink modified 4.4 years ago by Devon Ryan90k • written 4.4 years ago by David_emir340
0
gravatar for Devon Ryan
4.4 years ago by
Devon Ryan90k
Freiburg, Germany
Devon Ryan90k wrote:

GEO, SRA, ENA, and DDBJ are the largest. Also, they share most of their datasets between each other.

ADD COMMENTlink written 4.4 years ago by Devon Ryan90k
Thanks devon. Can we use any method to download these data?
ADD REPLYlink written 4.4 years ago by David_emir340
1

Ftp or a web browser will always work. SRA has its own toolkit and both it and GEO have R packages.

ADD REPLYlink written 4.4 years ago by Devon Ryan90k
Thanks.can you please tell me the best methods in rna seq data management? Any material available?
ADD REPLYlink written 4.4 years ago by David_emir340
1

There is no single best method. It will depend entirely on your needs.

ADD REPLYlink written 4.4 years ago by Devon Ryan90k
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