Hi, I'm trying to use RepeatModeler in the de novo identification of repeats in a newly-sequenced species. RepeatMasker is a prerequisite for RepeatModeler to work. Configuration of RepeatModeler produces the warning message
''WARNING: /RepeatMasker/Libraries/RepeatMasker.lib.[n??] doesn't exist! RepeatModeler will not run correctly without these files. Please re-run /RepeatMasker/configure to create these files automatically. Then re-run this script.''
However, I have configured RepeatMasker and RepeatMasker.lib was generated. I don't know what is '[n??]'. Plus RepeatMasker is perfectly working and masked the known repeats in the query sequence (when it was used independently). Does anyone have experience with such a problem and wants to help?? Thanks