I installed ABySS following the instructions from the official documentation.
>sudo apt-get install abyss
and then proceeded with a simple test
>wget http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases/1.3.4/test-data.tar.gz >tar xzvf test-data.tar.gz >abyss-pe k=25 name=test in='test-data/reads1.fastq test-data/reads2.fastq'
Everything looks fine except when I run
>abyss-fac test-unitigs.fa abyss-fac: command not found
It seems that the only avaiable command is abyss-pe.
Any idea of what could be the problem?