Mapping DIP-id to common name[Python]
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9.2 years ago
deepthi_vr • 0

I am doing a Protein protein interaction network clustering project. For testing the result I downloaded the data set from DIP database. It is having DIP-id for each protein and I want to compare the cluster(DIP-id as protein name) with the golden data set CYC2008 which has common name/ORF name as protein name in complex definition. Can anyone help me in converting DIP-id to gene name. For example DIP-839N to Taf1p.

Proteins • 3.0k views
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Before someone else clicks on this wondering WTF a DIP-id is, it's presumably the ID from the "Database of interacting proteins".

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I've changed my question. Thanks for you help

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Hi,

Please always provide context to your questions. Remember, people read your question for an average of 5 seconds before they decide if they're interested in helping you, and context-less abbreviations and one-liner questions only work against you.

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Thanks for your suggestion. I've changed my question

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Since the ID is particular to that database, you'll have to ask the people who created it for the conversion information (I'm surprised that wasn't in the download).

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For every Interaction DIP-id is there.

Uniprot/Refseq Id's are also available, but not for every interaction.

Thanks for your reply

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This is a problem that I faced now as well, how you got any solution?

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