Question: Extract only viridiplantae genes form swissprot
0
gravatar for rens.holmer
4.8 years ago by
rens.holmer20
Netherlands
rens.holmer20 wrote:

I want to use only viridiplantae genes in the SwissProt database. Using TagIdent I was able to sort of filter, but now I don't know how the either download these genes, or take the IDs and filter locally. Any help would be greatly appreciated.

blast alignment sequence • 1.2k views
ADD COMMENTlink modified 4.8 years ago by Chris S.290 • written 4.8 years ago by rens.holmer20
1
gravatar for Chris S.
4.8 years ago by
Chris S.290
United States
Chris S.290 wrote:

Just search UniProt for taxonomy:viridiplantae AND reviewed:yes to limit to SwissProt.  Click download to get FASTA and other formats as well as the REST url to reuse in your favorite application.

ADD COMMENTlink written 4.8 years ago by Chris S.290

This is wat I was looking for, thanks!

ADD REPLYlink written 4.8 years ago by rens.holmer20
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