We have a hiseq 2000 and manage our own GATK pipeline, grid, storage. We are in the process of purchasing a NextSeq 500 and are worndering if basespace would be a feasable longterm data analysis/housing solution?
If you are an illumina customer, do you use base space? if not can you explain the reason?
ADDENDUM: We do whole exome, tumor/normal (small panels to whole exome), transcriptome, and other 1000-5000 genes custom panels.