Entering edit mode
9.2 years ago
Mo
▴
920
Hello,
As I mentioned in my previous question How to perform Gene Set Enrichment Analysis
I am trying to perform GSEA, I finally managed to build my data according to the structure of GSEA software from broadinstitute . Now I am trying to set the paramaters which I face a problem and I could not find a solution in the internet. The parameters are as follows:
Expression dataset
Gene sets database
Number of permutations
phenotype labels
collapse dataset to gene symbols
permutation tupe
chip platform
I don't know what to choose for the gene sets database. I selected one of those which appears by itself, but I get error. Anyone knows how to fix this ? or how to select the parameters?