Hello, could anyone guide me generating a .free format alignment file? I am using MATLAB for making sequence analysis using SCA toolbox developed by Ranganathan group http://www.hhmi.swmed.edu/Labs/rr/sca.html. As I am newbie to MATLAB, I preferred following the tutorial and adapting codes.

Thanks in advance.

Kisun

Hi Kisun,

I just get started to try this method. Have you find out how to generate the .free file? Would you please let me know? I have no experience with bioinfomatics so any suggestion would be great! Thank you so much!

Zhongying

Any update on this?

I am still unable to figure it out.