[solved] MEME-ChIP: How to get the percentage of input regions which contain the motif?
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9.2 years ago
chemcehn ▴ 210

I am using MEME-ChIP to discover novel motifs from ChIP-seq data. Great program! My question is how to get the number of input regions which contain a newly found motif. I believe this information is kept somewhere as an intermediate result. Do you know how to get it? Thanks!

[solved] I found this information in the DREME report.

ChIP-Seq motif MEME alignment • 2.0k views
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