Question: Haplotype Reconstruction using PHASE
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gravatar for evo_genomics
4.0 years ago by
evo_genomics40
Pakistan
evo_genomics40 wrote:

I am new to this field so my question is quiet naïve and stupid. For my data set, it look likes one snp of my gene of interest is under selection.  I want to apply the ihs/ehh but before applying it, I have to reconstruct the haplotype. As I am interested in only one snp how should I select snps for haplotype reconstruction and how many snps should be selected? I am using PHASE for haplotype reconstruction.

Thanks

ADD COMMENTlink modified 3.9 years ago by Biostar ♦♦ 20 • written 4.0 years ago by evo_genomics40
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