Haplotype Reconstruction using PHASE
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6.7 years ago
evo_genomics ▴ 60

I am new to this field so my question is quiet naïve and stupid. For my data set, it look likes one snp of my gene of interest is under selection.  I want to apply the ihs/ehh but before applying it, I have to reconstruct the haplotype. As I am interested in only one snp how should I select snps for haplotype reconstruction and how many snps should be selected? I am using PHASE for haplotype reconstruction.

Thanks

Population Genetics Haplotype genotype PHASE • 2.5k views
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