Question: Refseq From Ensembl?
1
gravatar for Huggie
8.2 years ago by
Huggie20
Australia
Huggie20 wrote:

I understand that Refseq is a NCBI project. But I wonder if there is anyway to obtain the data from Ensembl?

I find Ensembl seems a little more organized at times but I'm used to NCBI and not at all familiar with Ensembl interface. I am considering fiddling around with the Ensembl interface.

refseq • 3.0k views
ADD COMMENTlink written 8.2 years ago by Huggie20
6
gravatar for Giulietta - Ensembl Helpdesk
7.7 years ago by
Cambridge, UK

See the table at the bottom of this view for RefSeqs mapped to Ensembl transcripts:

http://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000139618;r=13:32889611-32973805

Using the Perl API, you can find these as 'Xrefs' or External References.

If you want to use the browser, have a look at the videos on our youtube channel, or go through our 'website walkthrough':

http://www.youtube.com/user/EnsemblHelpdesk

http://www.ensembl.org/info/website/tutorials/coursebook.pdf

More tutorials can be found here:

http://www.ensembl.org/info/website/tutorials/index.html

Feel free to email our helpdesk, particularly for browser-related questions:

helpdesk@ensembl.org

ADD COMMENTlink written 7.7 years ago by Giulietta - Ensembl Helpdesk1.2k
3
gravatar for Travis
8.2 years ago by
Travis2.8k
USA
Travis2.8k wrote:

You can get the Refseq data from Ensembl either via Biomart or by extracting it via the Ensembl API.

ADD COMMENTlink written 8.2 years ago by Travis2.8k
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