Question: Refseq From Ensembl?
gravatar for Huggie
8.5 years ago by
Huggie20 wrote:

I understand that Refseq is a NCBI project. But I wonder if there is anyway to obtain the data from Ensembl?

I find Ensembl seems a little more organized at times but I'm used to NCBI and not at all familiar with Ensembl interface. I am considering fiddling around with the Ensembl interface.

refseq • 3.1k views
ADD COMMENTlink written 8.5 years ago by Huggie20
gravatar for Giulietta - Ensembl Helpdesk
8.0 years ago by
Cambridge, UK

See the table at the bottom of this view for RefSeqs mapped to Ensembl transcripts:;r=13:32889611-32973805

Using the Perl API, you can find these as 'Xrefs' or External References.

If you want to use the browser, have a look at the videos on our youtube channel, or go through our 'website walkthrough':

More tutorials can be found here:

Feel free to email our helpdesk, particularly for browser-related questions:

ADD COMMENTlink written 8.0 years ago by Giulietta - Ensembl Helpdesk1.2k
gravatar for Travis
8.5 years ago by
Travis2.8k wrote:

You can get the Refseq data from Ensembl either via Biomart or by extracting it via the Ensembl API.

ADD COMMENTlink written 8.5 years ago by Travis2.8k
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