Question: Bioconductor GOSemSim problem for yeast
0
gravatar for mahdijalili
5.8 years ago by
mahdijalili20
Iran, Islamic Republic Of
mahdijalili20 wrote:

Dear all,

I have a problem when I try to use bioconductor GOSemSim package to calculate the GO semantic similarities between yeast.

geneSim("852494", "854869", ont = "MF", organism="yeast", measure="Resnik")

return below result:

[1] NA
Warning messages:
1: In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
2: In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'

Any comments or advice are welcome.

Thanks.

ADD COMMENTlink modified 5.8 years ago • written 5.8 years ago by mahdijalili20
1
gravatar for mahdijalili
5.8 years ago by
mahdijalili20
Iran, Islamic Republic Of
mahdijalili20 wrote:

With thanks Guangchuang on bioconductor support site:

https://support.bioconductor.org/p/64729/

Thanks.

ADD COMMENTlink modified 5.8 years ago • written 5.8 years ago by mahdijalili20

Happy that you fixed your problem. However, I would suggest you to do not double post, and to ask question about Bioconductor preferentially on the Bioconductor help page.

ADD REPLYlink written 5.8 years ago by dago2.6k
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