Question: (Closed) Tool for plotting Kraken output
0
gravatar for deepthithomaskannan
5.7 years ago by
Canada
deepthithomaskannan320 wrote:

Hi,

I am trying to do taxonomy classification for my reads. I tried Kraken software. Is there any tools available for plotting Kraken output?

Thanks,

Deepthi

plot output kraken • 3.4k views
ADD COMMENTlink modified 5.7 years ago • written 5.7 years ago by deepthithomaskannan320

Hello deepthithomaskannan!

Content moved by OP to MEGAN and Kraken for taxonomy classification

For this reason we have closed your question. This allows us to keep related content together.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 5.7 years ago • written 5.7 years ago by RamRS30k
0
gravatar for RamRS
5.7 years ago by
RamRS30k
Baylor College of Medicine, Houston, TX
RamRS30k wrote:

From the Kraken manual, it looks like graphs are automatically generated. 

Also, it looks like Kraken produces a ton of output. You have to be more specific on what you'd like to see plotted.

EDIT: Looks like there are multiple tools named Kraken. Though this question provides no context, seems like you're looking at http://ccb.jhu.edu/software/kraken/ and not at ftp://ftp.ebi.ac.uk/pub/contrib/enrightlab/kraken/SequenceImp/src/seqimp-13-095/doc/imp.html

Like I mentioned earlier, context plays a crucial role in online scientific forums.

ADD COMMENTlink modified 5.7 years ago • written 5.7 years ago by RamRS30k
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