Question: Program to find genes up/down-regulated by a given gene
0
gravatar for c_u
4.8 years ago by
c_u140
United States
c_u140 wrote:

Hi,

I wanted to know if there is any program available that can take my gene of interest as input and give me the genes that are up/down-regulated by it.

Any help would be highly appreciated.

Sincerely,

Chahat

ADD COMMENTlink modified 4.8 years ago by alesssia550 • written 4.8 years ago by c_u140

also, does anyone think 'Expression Atlas' does this?

ADD REPLYlink written 3.6 years ago by c_u140
2
gravatar for RamRS
4.8 years ago by
RamRS25k
Houston, TX
RamRS25k wrote:

I guess you can look at KEGG, probably at programmatic queries to it. How I wish we had such a resource though!

ADD COMMENTlink written 4.8 years ago by RamRS25k
1

Thanks Ram for the quick reply. I'll have a look. Actually I am planning to do this as my Masters thesis - making this tool.

ADD REPLYlink written 4.8 years ago by c_u140
1

I look forward to seeing a working prototype!

ADD REPLYlink written 4.8 years ago by RamRS25k
1
gravatar for alesssia
4.8 years ago by
alesssia550
London, UK
alesssia550 wrote:

Beside KEGG, you can also look at WikiPathways and Reactome.  Moreover, Cytoscape offers some plugins for regulation network and pathways analysis.

ADD COMMENTlink written 4.8 years ago by alesssia550
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