Question: Program to find genes up/down-regulated by a given gene
0
gravatar for c_u
5.6 years ago by
c_u260
United States
c_u260 wrote:

Hi,

I wanted to know if there is any program available that can take my gene of interest as input and give me the genes that are up/down-regulated by it.

Any help would be highly appreciated.

ADD COMMENTlink modified 9 months ago • written 5.6 years ago by c_u260

also, does anyone think 'Expression Atlas' does this?

ADD REPLYlink written 4.4 years ago by c_u260
2
gravatar for RamRS
5.6 years ago by
RamRS30k
Baylor College of Medicine, Houston, TX
RamRS30k wrote:

I guess you can look at KEGG, probably at programmatic queries to it. How I wish we had such a resource though!

ADD COMMENTlink written 5.6 years ago by RamRS30k
1

Thanks Ram for the quick reply. I'll have a look. Actually I am planning to do this as my Masters thesis - making this tool.

ADD REPLYlink written 5.6 years ago by c_u260
1

I look forward to seeing a working prototype!

ADD REPLYlink written 5.6 years ago by RamRS30k

Hey man, the internet gods send me here. Did you do it ?

ADD REPLYlink written 9 months ago by hugo.avila110

(Sorry, i replied to the wrong person.) Hey man, the internet gods send me here. Did you do it ?

ADD REPLYlink written 9 months ago by hugo.avila110

Hey hugo, yes! And we are planning to publish it early next year. Will upload a preprint soon and will post the link here

ADD REPLYlink written 9 months ago by c_u260

That's very cool ! I'll be wating ;)

ADD REPLYlink written 9 months ago by hugo.avila110
1
gravatar for alesssia
5.6 years ago by
alesssia560
London, UK
alesssia560 wrote:

Beside KEGG, you can also look at WikiPathways and Reactome.  Moreover, Cytoscape offers some plugins for regulation network and pathways analysis.

ADD COMMENTlink written 5.6 years ago by alesssia560
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