Entering edit mode
9.2 years ago
mwanerhi erfgtr
▴
30
Hi
i have four strains and six genes in nucleotide and protein fasta files from each one that make an operon, i want to represent these genes on a diagram or gene graphy or synterny diagram, i have tried a few few softwares like clc workbench, snap gene, genome tools, but i could not get a good picture of all the genes in operons lfor comparison. does any body have a software that can do this? i have looked at a few answers from here Draw Gene Models From Gff3 File but all i have are fasta sequences.
i would like to create some thing like this, http://www.nature.com/nrmicro/journal/v9/n12/fig_tab/nrmicro2653_F3.html
Does any of your genomes have gff file? My guess is also that those six genes are not annotated? Majority of the publication standard software that I know require gff file.
all the genes have been annotated but some soft ware require gi from the ncbi but my strains are newly sequenced and annotated, am in the process of analysing them and submitting them. but i need to generate synterny diagrams allong the way.
thatnx