Question: Gene Ontology categorization
0
gravatar for Prasad
3.8 years ago by
Prasad1.5k
India
Prasad1.5k wrote:

Hi,

Gene Ontology has 3 main category (BP, CC and MF). Is there any data source or method where i can get all the GO ids which contribute/represent secondary metabolites, stress tolerance, environmental stimuli etc

Any suggestions would be appreciated. Thanks

 

annotation gene • 1.3k views
ADD COMMENTlink modified 3.8 years ago by dago2.5k • written 3.8 years ago by Prasad1.5k
0
gravatar for dago
3.8 years ago by
dago2.5k
Germany
dago2.5k wrote:

I think this is the easiest and fastest way:

http://www.ebi.ac.uk/QuickGO/GSearch?q=secondary%20metabolites#1=1

 

If then you click on "GO:0090487 secondary metabolite catabolic proces" in the new page you have detailed information of child terms in the different tabs.

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by dago2.5k

Thanks for the reply. Is it not just a text based search option?? results might not be the correct one i guess.

ADD REPLYlink written 3.8 years ago by Prasad1.5k

GO is based on vocabulary:

http://en.wikipedia.org/wiki/Gene_ontology

Look in "Ancestor charts" and see the connection parent-child. This method requires some manual work though.

 

ADD REPLYlink written 3.8 years ago by dago2.5k
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