how to get the geographic information of a specific genome ?
i.e. the area of collected sample of that genome ?
Thanks in advance.
There's no single answer to this question. Perhaps that information is online, perhaps not. Some databases will have a slot to hold that information, others won't.
I am working on bacterial genome from Ensembl database . But i did not find any specific information on geographic location of specific strain of a genome in any format of data.
Am i missing this information from ensembl or its not available there ?
Or is there any other database from where i can get this information ?
Of course i can get this geographic location information for a single genome from the article / paper , where they have published it . But for 5000 or more genome , its impossible.
I've never seen it in the Ensembl database, but you could just ask the Ensembl helpdesk to find out for sure.
Thanks for your reply .
Ensembl Help desk suggest the web link : http://www.ebi.ac.uk/ena
But I think, this type of metadata is not available so frequently .
The only way to go with the relevant publication search , but it is really impossible .
Let see what happen !!!!!
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