Geographic Location of a specific strain
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6.2 years ago

Hi, 

how to get the geographic information of a specific genome ? 

i.e. the area of collected sample of that genome ? 

Thanks in advance.  

sequencing genome • 962 views
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There's no single answer to this question. Perhaps that information is online, perhaps not. Some databases will have a slot to hold that information, others won't.

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I am working on bacterial  genome from Ensembl database . But i did not find any specific information on geographic location of specific strain of a genome in any format of data. 

Am i missing this information from ensembl or its not available there ? 

Or is there any other database from where i can get this information ? 

Of course i can get this geographic location information for a single genome from the article / paper , where they have published it . But for 5000 or more genome , its impossible. 

Thanks.

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I've never seen it in the Ensembl database, but you could just ask the Ensembl helpdesk to find out for sure.

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Thanks  for your reply . 

Ensembl Help desk suggest the web link : http://www.ebi.ac.uk/ena

But I think, this type of metadata is not available so frequently .

The only way to go with the relevant publication search , but it is really impossible .  

Let see what happen !!!!!

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