Question: Resources available for plant ortholog of rice genes
gravatar for Mask
4.9 years ago by
Mask170 wrote:

I would like to know any resources available for ortholog genes/proteins of a set of rice genes. For example, if I upload a list of genes and select the target plant organisms, it need to show the ortholog ids of the selected plants (any standard ids). I can go  for such a search in Gramene database. But I would like to scan some more plant species.  In inparanoid, there are many plant species with their sequences. In that case, I have to manually align each sequences, fix a cut off and select the ortholog candidates. I am curious to know any resources provide an analyzed data.

ADD COMMENTlink modified 4.9 years ago by Jean-Karim Heriche21k • written 4.9 years ago by Mask170
gravatar for Jean-Karim Heriche
4.9 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche21k wrote:

Try the BioMart interface of EnsemblPlants. It probably has the same species as in Gramene though.

ADD COMMENTlink written 4.9 years ago by Jean-Karim Heriche21k
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