Question: Transcription factor Visualization
0
gravatar for Mamta
4.1 years ago by
Mamta410
United States
Mamta410 wrote:

HI all,

 

I have 5 genes that I want to find a TF binding motif and visualize it based on the position and number of sites.

I did try RSAT for it (it is used for humans??) , also the graph didnt seem very pretty, I would rather prefer a pretty , colorful graph.

 

Thanks!

Mamta

ADD COMMENTlink modified 4.1 years ago by Mary11k • written 4.1 years ago by Mamta410
0
gravatar for dago
4.1 years ago by
dago2.5k
Germany
dago2.5k wrote:

If you want to have a graph that shows the conserved DNA domain where the TF binds, weblogo is a tool commonly used.

ADD COMMENTlink written 4.1 years ago by dago2.5k
0
gravatar for Mary
4.1 years ago by
Mary11k
Boston MA area
Mary11k wrote:

I have always liked the way Melina II shows the data: http://melina2.hgc.jp/public/index.html

ADD COMMENTlink written 4.1 years ago by Mary11k
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