Transcription factor Visualization
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6.7 years ago
Mamta ▴ 460

HI all,

I have 5 genes that I want to find a TF binding motif and visualize it based on the position and number of sites.

I did try RSAT for it (it is used for humans??) , also the graph didn't seem very pretty, I would rather prefer a pretty, colorful graph.

Thanks!

Mamta

factor TF visualization transcription • 1.3k views
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6.7 years ago
dago ★ 2.7k

If you want to have a graph that shows the conserved DNA domain where the TF binds, weblogo is a tool commonly used.

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6.7 years ago
Mary 11k

I have always liked the way Melina II shows the data: http://melina2.hgc.jp/public/index.html

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